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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8254177_8255523_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8254177 - 8255523
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
ACTAAATCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
SYTSCSHRLSEVEESQQLET
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
59.7
0.22
1
52
40.9
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047851
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888