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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82574605_82578179_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82574605 - 82578179
Intron Length:
3575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAAT
5'SS Class:
major
3'SS Sequence:
GTTGTTTATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTGTTTATTC
Flanking Amino Acid:
TLSQASCVSQMSEAEVNGQF
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
76.8
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.8
0.67
1
77.7
40.7
Minor 5ss
28.3
-2.5
3.2
39
46.4
Minor BPS
51.4
0.02
2
66.4
40

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000013325
82201906 - 82632215
430310
ENSAPLT00000043530
82165934 - 82632215
466282
ENSAPLT00000041783
82165934 - 82632215
466282
ENSAPLT00000034879
82287523 - 82632215
344693
ENSAPLT00000047249
82201811 - 82632215
430405