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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82578400_82600666_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82578400 - 82600666
Intron Length:
22267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
NITSTIRSTTAVTYTSYKKT
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.6
0.69
0.7
76.5
31.4
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000013325
82201906 - 82632215
430310
ENSAPLT00000043530
82165934 - 82632215
466282
ENSAPLT00000041783
82165934 - 82632215
466282
ENSAPLT00000034879
82287523 - 82632215
344693
ENSAPLT00000047249
82201811 - 82632215
430405