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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8258791_8263356_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8258791 - 8263356
Intron Length:
4566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTAG
5'SS Class:
major
3'SS Sequence:
TTAAAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTAAAATT
Flanking Amino Acid:
LSPSDNANLTDSSEYLADDC
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.8
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.8
0.53
1
65.9
43.9
Minor 5ss
42.2
-0.9
3.1
55.6
48.6
Minor BPS
47
-0.1
1.9
64.77
40.6

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047025
8203326 - 8293213
89888
ENSAPLT00000017294
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000014143
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888
ENSAPLT00000031801
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888