About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82601011_82614191_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
82601011 - 82614191
Intron Length:
13181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTAT
5'SS Class:
weak_major
3'SS Sequence:
TCTGTTGAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TTCTGTTGAATT
Flanking Amino Acid:
KSRRSSIGIQVETATDSDTE
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
65.8
42.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
63.3
0.3
1
63.4
42.1
Minor 5ss
49.7
-0
3
72.7
44.5
Minor BPS
56.2
0.27
1.9
76.06
41.4

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041783
82165934 - 82632215
466282
ENSAPLT00000034879
82287523 - 82632215
344693
ENSAPLT00000047249
82201811 - 82632215
430405
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000013325
82201906 - 82632215
430310
ENSAPLT00000043530
82165934 - 82632215
466282