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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82615953_82624779_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82615953 - 82624779
Intron Length:
8827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
CTATTCGTAATA
Flanking Amino Acid:
EAEENDLSEEILGKIRSAVG
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
67.2
0.39
1
66
39.9
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
54.9
0.15
2
67.11
40.1

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034879
82287523 - 82632215
344693
ENSAPLT00000047249
82201811 - 82632215
430405
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000013325
82201906 - 82632215
430310
ENSAPLT00000043530
82165934 - 82632215
466282
ENSAPLT00000041783
82165934 - 82632215
466282