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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82630506_82631996_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82630506 - 82631996
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCACCTTGAACT
Flanking Amino Acid:
PERKPTDWWMEERKVPPPVP
Intron Amino Acid Position:
955

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79
0.65
0.8
72.9
30.3
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
63.2
0.49
1.4
75.32
41.1

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000013325
82201906 - 82632215
430310
ENSAPLT00000043530
82165934 - 82632215
466282
ENSAPLT00000041783
82165934 - 82632215
466282
ENSAPLT00000034879
82287523 - 82632215
344693