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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82648789_82650323_R

Intron Information:

Intron Rank:
152763
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
82648789 - 82650323
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGCAGTG
5'SS Class:
weak_major
3'SS Sequence:
CTTTCTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTTTTCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.3
52
45.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84
0.76
0.8
80.2
31.8
Minor 5ss
38.7
-1.3
3.7
55.6
48.6
Minor BPS
63.9
0.3
1.6
68.05
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035160
82648017 - 82650670
2654