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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82650562_82652423_F

Intron Information:

Intron Rank:
125259
Intron Class:
major
Intron Phase:
Intron Coordinates:
82650562 - 82652423
Intron Length:
1862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
CAAATGTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74
38.4
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85.8
0.8
0.8
77.2
37
Minor 5ss
28.1
-2.5
2.7
31.4
42.8
Minor BPS
49.3
0.03
2.1
66.25
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017447
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025642
82650096 - 82653644
3549