About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82663804_82671399_R

Intron Information:

Intron Rank:
149308
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
82663804 - 82671399
Intron Length:
7596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAGGTGAC
5'SS Class:
weak_major
3'SS Sequence:
CTCTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATCATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.4
58
41.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.7
72.7
32.1
Minor 5ss
33.5
-1.9
3.5
47
42.4
Minor BPS
45.6
-0.2
2.1
63.1
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027830
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028495
82659070 - 82671729
12660