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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82672888_82673303_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82672888 - 82673303
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTCTGTATACTT
Flanking Amino Acid:
STCISWMLLKAGRANTFFWK
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
83.8
0.76
0.8
76.9
37.3
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
45.2
-0.2
2.2
67.75
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029635
82671750 - 82676134
4385