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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82721895_82726253_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82721895 - 82726253
Intron Length:
4359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TTTTATCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATCT
Flanking Amino Acid:
SFLRGNHKRHMQKLMRAARE
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
80
32.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90
0.9
0.7
84.5
30.1
Minor 5ss
48.8
-0.1
2.5
67.5
36.5
Minor BPS
69.5
0.69
1.5
84.41
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013260
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013870
82718815 - 82737368
18554