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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82728438_82732087_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82728438 - 82732087
Intron Length:
3650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
ATTTCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCTTCAACA
Flanking Amino Acid:
PMPEGLSQQQVVRRYILGSV
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.5
0.64
0.9
74.4
34.5
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
74.1
0.75
1.4
82.18
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013260
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013870
82718815 - 82737368
18554