About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82732166_82732387_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82732166 - 82732387
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCGATTTTAACA
Flanking Amino Acid:
YVDALKRILEQYEKPLSEME
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.8
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.7
0.87
0.6
84.5
23.5
Minor 5ss
29.1
-2.4
3.4
38.6
46.4
Minor BPS
58.7
0.27
1.3
59.83
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013260
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013870
82718815 - 82737368
18554