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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82733987_82736011_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82733987 - 82736011
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAA
U12 Branch Point Sequence:
CTTTCTTGCATT
Flanking Amino Acid:
TKPAFLDFLKQCQESSPDRI
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
62.1
0.3
1
53.3
33.6
Major PPT
80.4
0.68
0.9
73.9
35.4
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
54.1
0.21
1.9
76.06
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013260
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013870
82718815 - 82737368
18554