About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8274391_8275530_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8274391 - 8275530
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TTTTGTTTACTT
Flanking Amino Acid:
ARVLSADMLEAPRSEAHTIL
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
68.5
0.42
1
69.4
36.9
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
60.1
0.39
2
82.98
39.3

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031801
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047025
8203326 - 8293213
89888
ENSAPLT00000017294
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000014143
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888