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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8279125_8279666_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8279125 - 8279666
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TGTCTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGCTCCTTCAGT
Flanking Amino Acid:
KAPLLDYIYRVLHCCVNGSS
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.2
0.57
0.9
68.4
37.5
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
57.9
0.33
2.1
76.24
46.3

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047025
8203326 - 8293213
89888
ENSAPLT00000017294
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000014143
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888
ENSAPLT00000031801
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888