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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82864256_82866555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
82864256 - 82866555
Intron Length:
2300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATGTTGTCAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
48.8
-0.1
2.2
64.38
41.4

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014616
82864024 - 82938853
74830