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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82869281_82870347_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82869281 - 82870347
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TCTTTTATATTT
Flanking Amino Acid:
RYVLEEYAARKAASRQAAYY
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.4
0.57
1.1
76.2
36.9
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
49.7
0.06
1.8
71.56
40.4

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830