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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82872572_82873446_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82872572 - 82873446
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATT
Flanking Amino Acid:
VQGFPTPVVQWYKNEELITP
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
32.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74.4
0.55
1
73.4
41
Minor 5ss
30.9
-2.2
3.4
38.5
41.1
Minor BPS
83.2
1.13
0.9
94.4
25.5

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014616
82864024 - 82938853
74830
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126