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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82873540_82883094_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82873540 - 82883094
Intron Length:
9555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTGATTT
Flanking Amino Acid:
KYGVHVLHINRADFDDSATY
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84
30.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
40.5
-1.1
3.2
57.3
47.4
Minor BPS
59.5
0.38
1.7
78.82
37.6

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830