About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82883184_82883259_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82883184 - 82883259
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGTCAT
U12 Branch Point Sequence:
TGAACCTTTATT
Flanking Amino Acid:
ASTNCAVVVRRFREGEEPHP
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
72.2
0.55
1.2
73.6
41.8
Major PPT
82
0.72
0.9
75.8
37.8
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
60.5
0.41
1.7
74.62
41.7

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830