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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82883770_82888016_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82883770 - 82888016
Intron Length:
4247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATGTATCTGATG
Flanking Amino Acid:
LRPRAEWYRDDVLIKDSKWT
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
84.3
0.77
0.8
76.4
37.6
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
44.6
-0.5
1.8
49.85
38.5

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014616
82864024 - 82938853
74830
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126