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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82893324_82895637_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82893324 - 82895637
Intron Length:
2314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTACTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TGCTGTTTAACA
Flanking Amino Acid:
KIVISKDDLEGDIQIPGPPT
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
79.8
0.67
0.9
70.3
40.5
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
63.5
0.42
1.8
71.5
41.1

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830