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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82895766_82899141_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82895766 - 82899141
Intron Length:
3376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTGT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGATTTTCAGCT
Flanking Amino Acid:
REPLTYFIEKSMVGSGSWQR
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.3
40
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
88.7
0.87
0.6
85.5
21.8
Minor 5ss
40.2
-1.1
3.2
58.8
45.7
Minor BPS
49.9
0.07
1.7
69.55
41.3

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830