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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82899326_82902154_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82899326 - 82902154
Intron Length:
2829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTACAT
U12 Branch Point Sequence:
TGTTCCATAACA
Flanking Amino Acid:
TEPIQPQDTVVVPSAPGRVV
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
83.6
0.76
0.6
83.8
24.3
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
76.7
0.83
1.5
85.7
32.8

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014616
82864024 - 82938853
74830
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126