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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82903566_82904332_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82903566 - 82904332
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CAATTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TACTCTTCAATT
Flanking Amino Acid:
SEAIKVQAALRRSVSHMACP
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
78.9
0.65
0.8
77.3
36.4
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
65.3
0.56
1.5
77.09
39.9

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014616
82864024 - 82938853
74830