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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82904354_82905620_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82904354 - 82905620
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGGG
5'SS Class:
major
3'SS Sequence:
TATTTCCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ATTTCCTTATAG
Flanking Amino Acid:
AALRRSVSHMACPSYPHGIT
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
58
47.1
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82.9
0.74
0.7
77.6
30.9
Minor 5ss
30.3
-2.3
3.3
31
43.1
Minor BPS
64.8
0.33
1.8
71.39
41.2

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014616
82864024 - 82938853
74830