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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82908459_82912840_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82908459 - 82912840
Intron Length:
4382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGAAATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATATTGAAGT
Flanking Amino Acid:
KCKAWTMPEPGPAYDLTVCE
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
64.1
0.32
1
59.8
45.3
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
51.9
0.14
1.9
74.75
41.7

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830