About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82913020_82913195_F


Intron Information:

Intron Rank:
22

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
82913020 - 82913195

Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAACATTT

5'SS Class:
strong_major

3'SS Sequence:
TATCCTGTTCAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTTAT

U12 Branch Point Sequence:
GTTTTCTTATAT

Flanking Amino Acid:
EKPTAQRYFKVTDLHEGHTY

Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.7
0.72
1.1
81.6
33.2

Major BPS
91.4
1.03
0.7
79.9
34.9

Major PPT
66.7
0.38
1.1
63.9
41.6

Minor 5ss
49.4
-0
2.9
73.9
42.6

Minor BPS
64.6
0.54
1.7
81.78
39.4

Associated Gene:

Gene:
MYOM2

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

82864024 - 82938853
74830

82860774 - 82938899
78126

82860774 - 82938899
78126