About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82916791_82920960_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82916791 - 82920960
Intron Length:
4170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGCTTATTT
Flanking Amino Acid:
INDKEVENSDRHKINCDRPN
Intron Amino Acid Position:
1056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.1
31.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.4
0.84
0.8
85.9
32.9
Minor 5ss
35.4
-1.7
3.2
46.1
42.2
Minor BPS
60.6
0.41
2
80.93
41.2

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830