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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82921106_82921220_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82921106 - 82921220
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAAATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTCTTCTGAAAT
Flanking Amino Acid:
NQSSLVLIGDAFKAVLAESE
Intron Amino Acid Position:
1104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
65.8
0.36
1
59.5
40
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
59.2
0.37
1.6
73.47
43.3

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830