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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82927149_82928517_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82927149 - 82928517
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
GCTTTCCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCAGTAAAC
Flanking Amino Acid:
KGECHLSIPRLSRKDEGVYK
Intron Amino Acid Position:
1185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.1
60.1
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.1
0.66
0.8
73.7
31.3
Minor 5ss
36.2
-1.6
3.6
46
49.3
Minor BPS
49.3
-0
2.3
69.99
40.7

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830