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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82928606_82930137_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82928606 - 82930137
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATTA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
DVSTLELSGKVYDDIILALS
Intron Amino Acid Position:
1214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
77.8
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
47.1
-0.3
2.9
65.1
46.1
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014616
82864024 - 82938853
74830
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126