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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82933781_82934108_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82933781 - 82934108
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATA
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
ACTCTCTCAACT
Flanking Amino Acid:
FKRTLDLSGQAFDDAYAEFQ
Intron Amino Acid Position:
1317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
75.8
33.1
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
42.5
-0.8
3
57.4
46.9
Minor BPS
62.5
0.47
1.5
75.91
40.6

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830