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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82934291_82935123_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82934291 - 82935123
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTTTAACTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
RLKAAAFAEKNRGKVIGGLP
Intron Amino Acid Position:
1337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.4
0.48
0.9
62.9
38.3
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830