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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82935180_82938541_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82935180 - 82938541
Intron Length:
3362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTCTATTT
Flanking Amino Acid:
PDVVTIMDGKTLNLTCTVFG
Intron Amino Acid Position:
1356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.1
0.74
0.7
81.4
23.6
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
49.1
0.02
1.9
71.32
40.7

Associated Gene:

Gene:
MYOM2
Ensembl Gene ID:
ENSAPLG00000013857
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047158
82860774 - 82938899
78126
ENSAPLT00000025131
82860774 - 82938899
78126
ENSAPLT00000014616
82864024 - 82938853
74830