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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83079720_83089818_F

Intron Information:

Intron Rank:
123548
Intron Class:
major
Intron Phase:
Intron Coordinates:
83079720 - 83089818
Intron Length:
10099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.4
0.89
0.6
87.7
22.3
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
77.8
0.85
1.5
87.34
28.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016627
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018326
83078990 - 83091086
12097