Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83089876_83090589_F

Intron Information:

Intron Rank:

123549

Intron Class:

major

Intron Phase:

Intron Coordinates:

83089876 - 83090589

Intron Length:

714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TCATTTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TCTGCTTCATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

76.2

39.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

80.4

0.68

0.8

73.8

36.7

Minor 5ss

35.6

-1.6

2.7

37.6

Minor BPS

48.3

-0

1.9

67.22

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018326

83078990 - 83091086

12097