About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83287147_83294725_R

Intron Information:

Intron Rank:
135219
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
83287147 - 83294725
Intron Length:
7579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTCT
5'SS Class:
weak_major
3'SS Sequence:
GTCTTTGGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
AAATGTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.1
37.2
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
68.2
0.41
1
60.7
44.7
Minor 5ss
65.7
0.53
1.9
77.2
37.8
Minor BPS
51
0.01
1.8
60.2
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023495
83286600 - 83294828
8229