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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83549139_83632278_F

Intron Information:

Intron Rank:
141301
Intron Class:
major
Intron Phase:
Intron Coordinates:
83549139 - 83632278
Intron Length:
83140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
80.2
0.68
0.9
74.2
35.2
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026081
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040183
83548823 - 83633132
84310