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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83601394_83602594_R

Intron Information:

Intron Rank:
145082
Intron Class:
major
Intron Phase:
Intron Coordinates:
83601394 - 83602594
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCACCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGAGACTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
68.5
0.42
0.8
61.3
28.9
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
61.7
0.45
1.6
74.75
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022880
83601100 - 83602673
1574