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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83602674_83605442_R

Intron Information:

Intron Rank:
145083
Intron Class:
major
Intron Phase:
Intron Coordinates:
83602674 - 83605442
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.7
81.1
30.9
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
53.9
0.2
1.5
65.97
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031205
83602520 - 83605595
3076