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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83655894_83660742_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83655894 - 83660742
Intron Length:
4849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTCATGAAAA
Flanking Amino Acid:
KWTGKSPICKSKGVREVNET
Intron Amino Acid Position:
3216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.6
0.82
0.7
82.4
28.2
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
57
0.22
1.8
72.41
38.4

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477
ENSAPLT00000002822
83639896 - 84232372
592477