Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83668817_83669883_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83668817 - 83669883

Intron Length:

1067

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGCATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGATTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTTTTTTTGATT

Flanking Amino Acid:

TWNQSKPICKAITCGPPPPV

Intron Amino Acid Position:

2978

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

0.9

79.6

35.4

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

85.9

0.81

0.9

85.4

34.3

Minor 5ss

-0.4

2.8

65.5

45.8

Minor BPS

70.4

0.72

1.1

81.5

34.7

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002822

83639896 - 84232372

592477