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Intron Name: Anas_platyrhynchos_platyrhynchos_3_83668817_83680415_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83668817 - 83680415

Intron Length:

11599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGATTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTTTTTTTGATT

Flanking Amino Acid:

SWSGIQPVCEAITCGPPPPV

Intron Amino Acid Position:

2801

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.9

90.9

28.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

85.9

0.81

0.9

85.4

34.3

Minor 5ss

40.3

-1.1

3.2

59.2

45.4

Minor BPS

70.4

0.72

1.1

81.5

34.7

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030936

83639896 - 84232372

592477