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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83670064_83671784_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83670064 - 83671784
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTGCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AAAAAAAAAACA
Flanking Amino Acid:
TWTGTAPDCTVISCGDPGAL
Intron Amino Acid Position:
2918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.2
80.7
33.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
81.4
0.71
0.9
77.7
36.7
Minor 5ss
30.6
-2.2
2.9
40.4
45.3
Minor BPS
36.8
-1
2
44.65
36.2

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002822
83639896 - 84232372
592477