About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83704508_83712670_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83704508 - 83712670
Intron Length:
8163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATGGATT
Flanking Amino Acid:
LWSGTETQCLAGHCGSPDPI
Intron Amino Acid Position:
2561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.2
0.72
0.7
77.9
29.2
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
48.4
-0
2.2
76.96
39.7

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002822
83639896 - 84232372
592477