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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83704508_83717264_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83704508 - 83717264
Intron Length:
12757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TCTTCTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATGGATT
Flanking Amino Acid:
SVGNERPSCKAGHCGSPDPI
Intron Amino Acid Position:
2503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.2
0.72
0.7
77.9
29.2
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
48.4
-0
2.2
76.96
39.7

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477