Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83767341_83775796_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83767341 - 83775796

Intron Length:

8456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTTAT

U12 Branch Point Sequence:

AAGCACTTATTT

Flanking Amino Acid:

NRQGFKLTYQAYELQNCPDP

Intron Amino Acid Position:

1965

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.9

78.8

38.3

Major BPS

71.3

0.53

61.3

Major PPT

92.3

0.95

0.6

85.1

29.7

Minor 5ss

47.5

-0.2

2.8

64.1

47.4

Minor BPS

48.2

-0

1.7

62.31

41.5

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030936

83639896 - 84232372

592477

ENSAPLT00000002822

83639896 - 84232372

592477